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alignBurstSeq()
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Align synced data with known burst sequence |
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applySync()
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Apply sync model to toa matrix to obtain synced data |
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checkInp()
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Check consistency of `inp` object obtained from `getInp()` |
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checkInpSync()
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Check consistency of `inp_sync` object obtained from `getInpSync()` |
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fineTuneSyncModel()
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Fine-tune an already fitted sync_model
Wrapper function to re-run getSyncModel() using the same data, but excluding outliers. Note dimensions of data might change if eps_threshold results in empty rows in the TOA-matrix. |
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getBbox()
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Get a standard bounding box to impose spatial constraints |
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getDatTmb()
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Get data for input to TMB |
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getInits()
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Get inits for use in TMB |
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getInp()
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Get prepared inp-object for use in TMB-call |
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getInpParams()
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Get parameters for this specific data set |
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getInpSync()
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Get object inp for synchronization |
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getParams()
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Get params-list for use in TMB |
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getSyncCoverage()
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Quick overview to check if all hydros have enough data within each offset period. |
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getSyncModel()
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Get sync model from inp_sync object obtained by getInpSync() |
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getToaYaps()
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Build TOA matrix from synced data.table - also do some pre-filtering of severe MP, pruning loose ends etc |
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hald
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Test data from Lake Hald, Denmark |
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plotBbox()
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Graphical representation of spatial constraints |
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plotSyncModelCheck()
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Plot to check how well the sync model is working |
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plotSyncModelHydros()
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Plot hydrophone positions. Especially useful if some hydro re-positioned as part of the sync model. |
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plotSyncModelResids()
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Plot residuals of sync_model to enable check of model |
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plotYaps()
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Basic plots of yaps output |
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prepDetections()
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Prepare detections data.table from raw data - csv-files exported from vendor software |
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runYaps() runTmb()
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Function to run TMB to estimate track |
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simHydros()
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Sim hydrophone array configuration |
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simTelemetryTrack()
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Simulate telemetry track based on known true track obtained using simTrueTrack |
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simToa()
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Sim TOA matrix for the supplied telemetryTrack |
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simTOP()
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Simulate time of pings (Internal function) |
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simTrueTrack()
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Simulate a known movement track for subsequent estimation using YAPS |
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ssu1
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Test data from Florida Bay |
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tempToSs()
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Calculate speed of sound from water temperature, salinity and depth
Based on H. Medwin (1975) Speed of sound in water: A simple equation for realistic parameters. (https://doi.org/10.1121/1.380790) |
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testYaps()
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Test YAPS core functionality |